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1. Lysenko A, Boroevich KA, Tsunoda T. Arete - candidate gene prioritization using biological network topology with additional evidence types. BioData Mining, 10, 22 (2017).

2. Okamoto N, Miya F, Hatsukawa Y, Suzuki Y, Kawato K, Yamamoto Y, Tsunoda T, Kato M, Saitoh S, Yamasaki M, Kanemura Y, Kosaki K. Siblings with optic neuropathy and RTN4IP1 mutation. Journal of Human Genetics. 2017 Jun 22. doi: 10.1038/jhg.2017.68. [Epub ahead of print]

3. Hori I, Otomo T, Nakashima M, Miya F, Negishi Y, Shiraishi H, Nonoda Y, Magara S, Tohyama J, Okamoto N, Kumagai T, Shimoda K, Yukitake Y, Kajikawa D, Morio T, Hattori A, Nakagawa M, Ando N, Nishino I, Kato M, Tsunoda T, Saitsu H, Kanemura Y, Yamasaki M, Kosaki K, Matsumoto N, Yoshimori T, Saitoh S. Defects in autophagosome-lysosome fusion underlie Vici syndrome, a neurodevelopmental disorder with multisystem involvement. Scientific Reports, 7, 3552 (2017).

4. Ishigaki K, Kochi Y, Suzuki A, Tsuchida Y, Tsuchiya H, Sumitomo S, Yamaguchi K, Nagafuchi Y, Nakachi S, Kato R, Sakurai K, Shoda H, Ikari K, Taniguchi A, Yamanaka H, Miya F, Tsunoda T, Okada Y, Momozawa Y, Kamatani Y, Yamada R, Kubo M, Fujio K, Yamamoto K. Polygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis. Nature Genetics, 49, 1120-1125 (2017).

5. Shigemizu D, Iwase T, Yoshimoto M, Suzuki Y, Miya F, Boroevich KA, Katagiri T, Zembutsu H, Tatsuhiko Tsunoda. The prediction models for postoperative overall survival and disease-free survival in patients with breast cancer. Cancer Medicine, 6, 1627-1638 (2017).

6. Kato K+, Miya F+(+: co-first), Hori I, Ieda D, Ohashi K, Negishi Y, Hattori A, Okamoto N, Kato M, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Saitoh S. A novel missense mutation in the HECT domain of NEDD4L identified in a girl with periventricular nodular heterotopia, polymicrogyria and cleft palate. Journal of Human Genetics. 2017 May 18. doi: 10.1038/jhg.2017.53. [Epub ahead of print]

7. Kawamura S, Onai N, Miya F, Sato T, Tsunoda T, Kurabayashi K, Yotsumoto S, Kuroda S, Takenaka K, Akashi K, Ohteki T. Identification of a Human Clonogenic Progenitor with Strict Monocyte Differentiation Potential: A Counterpart of Mouse cMoPs. Immunity, 46, 835-848 (2017).

8. Dehzangi A, López Y, Lal SP, Taherzadeh G, Michaelson J, Sattar A, Tsunoda T (co-last), Sharma A (co-last). PSSM-Suc: Accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction. Journal of Theoretical Biology, 425, 97-102 (2017).

9. Okamoto N, Miya F, Tsunoda T, Kato M, Saitoh S, Yamasaki M, Kanemura Y, Kosaki K. Novel MCA/ID syndrome with ASH1L mutation. American Journal of Medical Genetics Part A, 173, 1644-1648 (2017).

10. López Y, Dehzangi A, Lal SP, Taherzadeh G, Michaelson J, Sattar A, Tsunoda T*, Sharma A*. SucStruct: Prediction of succinylated lysine residues by using structural properties of amino acids. Analytical Biochemistry, 527, 24-32 (2017).

11. Spracklen CN, Chen P, Kim YJ, Wang X, Cai H, Li S, Long J, Wu Y, Wang YX, Takeuchi F, Wu JY, Jung KJ, Hu C, Akiyama K, Zhang Y, Moon S, Johnson TA, Li H, Dorajoo R, He M, Cannon ME, Roman TS, Salfati E, Lin KH, Guo X, Sheu WH, Absher D, Adair LS, Assimes TL, Aung T, Cai Q, Chang LC, Chen CH, Chien LH, Chuang LM, Chuang SC, Du S, Fan Q, Fann CS, Feranil AB, Friedlander Y, Gordon-Larsen P, Gu D, Gui L, Guo Z, Heng CK, Hixson J, Hou X, Hsiung CA, Hu Y, Hwang MY, Hwu CM, Isono M, Juang JJ, Khor CC, Kim YK, Koh WP, Kubo M, Lee IT, Lee SJ, Lee WJ, Liang KW, Lim B, Lim SH, Liu J, Nabika T, Pan WH, Peng H, Quertermous T, Sabanayagam C, Sandow K, Shi J, Sun L, Tan PC, Tan SP, Taylor KD, Teo YY, Toh SA, Tsunoda T, van Dam RM, Wang A, Wang F, Wang J, Wei WB, Xiang YB, Yao J, Yuan JM, Zhang R, Zhao W, Chen YI, Rich SS, Rotter JI, Wang TD, Wu T, Lin X, Han BG, Tanaka T, Cho YS, Katsuya T, Jia W, Jee SH, Chen YT, Kato N, Jonas JB, Cheng CY, Shu XO, He J, Zheng W, Wong TY, Huang W, Kim BJ, Tai ES, Mohlke KL, Sim X. Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels. Human Molecular Genetics, 26, 1770-1784 (2017).

12. Sharma R, Kumar S, Tsunoda T, Patil A, Sharma A. Predicting MoRFs in protein sequences using HMM profiles. BMC Bioinformatics, 17(Suppl 19), 504 (2016).

13. Saini H*, Lal SP, Naidu VV, Pickering VW, Singh G, Tsunoda T*, Sharma A. Gene masking - a technique to improve accuracy for cancer classification with high dimensionality in microarray data. BMC Medical Genomics, 9(Suppl 3), 74 (2016).

14. Negishi Y, Miya F, Hattori A, Johmura Y, Nakagawa M, Ando N, Hori I, Togawa T, Aoyama K, Ohashi K, Fukumura S, Mizuno S, Umemura A, Kishimoto Y, Okamoto N, Kato M, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Nakanishi M, Saitoh S. A combination of genetic and biochemical analyses for the diagnosis of PI3K-AKT-mTOR pathway-associated megalencephaly. BMC Medical Genetics, 18, 4 (2017).

15. Shimizu C, Eleftherohorinou H, Wright VJ, Kim J, Alphonse MP, Perry JC, Cimaz R, Burgner D, Dahdah N, Hoang LT, Khor CC, Salgado A, Tremoulet AH, Davila S, Kuijpers TW, Hibberd ML, Johnson TA, Takahashi A, Tsunoda T, Kubo M, Tanaka T, Onouchi Y, Yeung RS, Coin LJ, Levin M, Burns JC. Genetic Variation in the SLC8A1 Calcium Signaling Pathway Is Associated with Susceptibility to Kawasaki Disease and Coronary Artery Abnormalities. Circulation: Cardiovascular Genetics, 9, 559-568 (2016).

16. Hamada N, Negishi Y, Mizuno M, Miya F, Hattori A, Okamoto N, Kato M, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Tabata H, Saitoh S, Nagata KI. Role of a heterotrimeric G-protein, Gi2, in the corticogenesis: Possible involvement in periventricular nodular heterotopia and intellectual disability. Journal of Neurochemistry, 140, 82-95 (2017).

17. Ichikawa M, Aiba T, Ohno S, Shigemizu D, Ozawa J, Sonoda K, Fukuyama M, Itoh H, Miyamoto Y, Tsunoda T, Makiyama T, Tanaka T, Shimizu W, Horie M. Phenotypic Variability of ANK2 Mutations in Patients With Inherited Primary Arrhythmia Syndromes. Circulation Journal, 80, 2435-2442 (2016).

18. Furuta M, Ueno M, Fujimoto A, Hayami S, Yasukawa S, Kojima F, Arihiro K, Kawakami Y, Wardell CP, Shiraishi Y, Tanaka H, Nakano K, Maejima K, Sasaki-Oku A, Tokunaga N, Boroevich KA, Abe T, Aikata H, Ohdan H, Goto K, Kubo M, Tsunoda T, Miyano S, Chayama K, Yamaue H, Nakagawa H. Whole genome sequencing discriminates hepatocellular carcinoma with intrahepatic metastasis from multicentric tumors. Journal of Hepatology, 66, 363-373 (2017).

19. Chang SW, McDonough CW, Gong Y, Johnson TA, Tsunoda T, Gamazon ER, Perera MA, Takahashi A, Tanaka T, Kubo M, Pepine CJ, Johnson JA, Cooper-DeHoff RM. Genome-wide association study identifies pharmacogenomic loci linked with specific antihypertensive drug treatment and new-onset diabetes. Pharmacogenomics Journal, 2016 Sep 27. doi: 10.1038/tpj.2016.67. [Epub ahead of print]

20. Tsutsumi M, Yokoi S, Miya F, Miyata M, Kato M, Okamoto N, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Saitoh S, Kurahashi H. Novel compound heterozygous variants in PLK4 identified in a patient with autosomal recessive microcephaly and chorioretinopathy. European Journal of Human Genetics, 24, 1702-1706 (2016).

21. Yagihara N, Watanabe H, Barnett P, Duboscq-Bidot L, Thomas AC, Yang P, Ohno S, Hasegawa K, Kuwano R, Chatel S, Redon R, Schott JJ, Probst V, Koopmann TT, Bezzina CR, Wilde AA, Nakano Y, Aiba T, Miyamoto Y, Kamakura S, Darbar D, Donahue BS, Shigemizu D, Tanaka T, Tsunoda T, Suda M, Sato A, Minamino T, Endo N, Shimizu W, Horie M, Roden DM, Makita N. Variants in the SCN5A Promoter Associated With Various Arrhythmia Phenotypes. Journal of American Heart Association, 5, pii: e003644 (2016).

22. Sharma A, Shigemizu D, Boroevich KA, López Y, Kamatani Y, Kubo M, Tsunoda T. Stepwise iterative maximum likelihood clustering approach. BMC Bioinformatics, 17, 319 (2016).

23. Fujimoto A, Okada Y, Boroevich KA, Tsunoda T, Taniguchi H, Nakagawa H. Systematic analysis of mutation distribution in three dimensional protein structures identifies cancer driver genes. Scientific Reports, 6, 26483 (2016).

24. Hori I+, Miya F+(+: co-first), Ohashi K, Negishi Y, Hattori A, Ando N, Okamoto N, Kato M, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Saitoh S. Novel splicing mutation in the ASXL3 gene causing Bainbridge-Ropers syndrome. American Journal of Medical Genetics Part A, 170, 1863-1867 (2016).

25. Fujimoto A+, Furuta M+, Totoki Y+, Tsunoda T+, Kato M+ (+: co-first), Shiraishi Y, Tanaka H, Taniguchi H, Kawakami Y, Ueno M, Gotoh K, Ariizumi S, Wardell CP, Hayami S, Nakamura T, Aikata H, Arihiro K, Boroevich KA, Abe T, Nakano K, Maejima K, Sasaki-Oku A, Ohsawa A, Shibuya T, Nakamura H, Hama N, Hosoda F, Arai Y, Ohashi S, Urushidate T, Nagae G, Yamamoto S, Ueda H, Tatsuno K, Ojima H, Hiraoka N, Okusaka T, Kubo M, Marubashi S, Yamada T, Hirano S, Yamamoto M, Ohdan H, Shimada K, Ishikawa O, Yamaue H, Chayama K, Miyano S, Aburatani H, Shibata T, Nakagawa H. Whole genome mutational landscape and characterization of non-coding and structural mutations in liver cancer. Nature Genetics, 48, 500-509 (2016).

26. Sharma A, Boroevich KA, Shigemizu D, Kamatani Y, Kubo M and Tsunoda T. Hierarchical Maximum Likelihood Clustering Approach. IEEE Transactions on Biomedical Engineering, 64, 112-122 (2017).

27. Morishita M, Muramatsu T, Suto Y, Hirai M, Konishi T, Hayashi S, Shigemizu D, Tsunoda T, Moriyama K, Inazawa J. Chromothripsis-like chromosomal rearrangements induced by ionizing radiation using proton microbeam irradiation system. Oncotarget, 7, 10182-10192 (2016).

28. Pattaro C, Teumer A, Gorski M, Chu AY, Li M, Mijatovic V, Garnaas M, Tin A, Sorice R, Li Y, Taliun D, Olden M, Foster M, Yang Q, Chen MH, Pers TH, Johnson AD, Ko YA, Fuchsberger C, Tayo B, Nalls M, Feitosa MF, Isaacs A, Dehghan A, d'Adamo P, Adeyemo A, Dieffenbach AK, Zonderman AB, Nolte IM, van der Most PJ, Wright AF, Shuldiner AR, Morrison AC, Hofman A, Smith AV, Dreisbach AW, Franke A, Uitterlinden AG, Metspalu A, Tonjes A, Lupo A, Robino A, Johansson Å, Demirkan A, Kollerits B, Freedman BI, Ponte B, Oostra BA, Paulweber B, Krämer BK, Mitchell BD, Buckley BM, Peralta CA, Hayward C, Helmer C, Rotimi CN, Shaffer CM, Müller C, Sala C, van Duijn CM, Saint-Pierre A, Ackermann D, Shriner D, Ruggiero D, Toniolo D, Lu Y, Cusi D, Czamara D, Ellinghaus D, Siscovick DS, Ruderfer D, Gieger C, Grallert H, Rochtchina E, Atkinson EJ, Holliday EG, Boerwinkle E, Salvi E, Bottinger EP, Murgia F, Rivadeneira F, Ernst F, Kronenberg F, Hu FB, Navis GJ, Curhan GC, Ehret GB, Homuth G, Coassin S, Thun GA, Pistis G, Gambaro G, Malerba G, Montgomery GW, Eiriksdottir G, Jacobs G, Li G, Wichmann HE, Campbell H, Schmidt H, Wallaschofski H, Völzke H, Brenner H, Kroemer HK, Kramer H, Lin H, Mateo Leach I, Ford I, Guessous I, Rudan I, Prokopenko I, Borecki I, Heid IM, Kolcic I, Persico I, Jukema JW, Wilson JF, Felix JF, Divers J, Lambert JC, Stafford JM, Gaspoz JM, Smith JA, Faul JD, Wang JJ, Ding J, Hirschhorn JN, Attia J, Whitfield JB, Chalmers J, Viikari J, Coresh J, Denny JC, Karjalainen J, Fernandes JK, Endlich K, Butterbach K, Keene KL, Lohman K, Portas L, Launer LJ, Lyytikäinen LP, Yengo L, Franke L, Ferrucci L, Rose LM, Kedenko L, Rao M, Struchalin M, Kleber ME, Cavalieri M, Haun M, Cornelis MC, Ciullo M, Pirastu M, de Andrade M, McEvoy MA, Woodward M, Adam M, Cocca M, Nauck M, Imboden M, Waldenberger M, Pruijm M, Metzger M, Stumvoll M, Evans MK, Sale MM, Kähönen M, Boban M, Bochud M, Rheinberger M, Verweij N, Bouatia-Naji N, Martin NG, Hastie N, Probst-Hensch N, Soranzo N, Devuyst O, Raitakari O, Gottesman O, Franco OH, Polasek O, Gasparini P, Munroe PB, Ridker PM, Mitchell P, Muntner P, Meisinger C, Smit JH; ICBP Consortium; AGEN Consortium; CARDIOGRAM; CHARGe-Heart Failure Group; ECHOGen Consortium, Kovacs P, Wild PS, Froguel P, Rettig R, Mägi R, Biffar R, Schmidt R, Middelberg RP, Carroll RJ, Penninx BW, Scott RJ, Katz R, Sedaghat S, Wild SH, Kardia SL, Ulivi S, Hwang SJ, Enroth S, Kloiber S, Trompet S, Stengel B, Hancock SJ, Turner ST, Rosas SE, Stracke S, Harris TB, Zeller T, Zemunik T, Lehtimäki T, Illig T, Aspelund T, Nikopensius T, Esko T, Tanaka T, Gyllensten U, Völker U, Emilsson V, Vitart V, Aalto V, Gudnason V, Chouraki V, Chen WM, Igl W, März W, Koenig W, Lieb W, Loos RJ, Liu Y, Snieder H, Pramstaller PP, Parsa A, O'Connell JR, Susztak K, Hamet P, Tremblay J, de Boer IH, Böger CA, Goessling W, Chasman DI, Köttgen A, Kao WH, Fox CS. Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function. Nature Communications, 7, 10023 (2016).

29. Nozaki F, Kusunoki T, Okamoto N, Yamamoto Y, Miya F, Tsunoda T, Kosaki K, Kumada T, Shibata M, Fujii T. ALDH18A1-related cutis laxa syndrome with cyclic vomiting. Brain Development, 38, 678-684 (2016).

30. Lyons J, Paliwal KK, Dehzangi A, Heffernan R, Tsunoda T, Sharma A. Protein fold recognition using HMM-HMM alignment and Dynamic Programming. Journal of Theoretical Biology, 393, 67-74 (2016).

31. Konta A, Ozaki K, Sakata Y, Takahashi A, Morizono T, Suna S, Onouchi Y, Tsunoda T, Kubo M, Komuro I, Eishi Y, Tanaka T. A functional SNP in FLT1 increases risk of coronary artery disease in a Japanese population. Journal of Human Genetics, 61, 435-441 (2016).

32. Carbone M, Flores EG, Emi M, Johnson TA, Tsunoda T, Behner D, Hoffman H, Hesdorffer M, Nasu M, Napolitano A, Powers A, Minaai M, Baumann F, Bryant-Greenwood P, Lauk O, Kirschner MB, Weder W, Opitz I, Pass HI, Gaudino G, Pastorino S, Yang H. Combined Genetic and Genealogic Studies Uncover a Large BAP1 Cancer Syndrome Kindred Tracing Back Nine Generations to a Common Ancestor from the 1700s. PLoS Genetics, 11, e1005633 (2015).

33. Ito A, Shimazu T, Maeda S, Shah AA, Tsunoda T, Iemura S, Natsume T, Suzuki T, Motohashi H, Yamamoto M, Yoshida M. The subcellular localization and activity of cortactin is regulated by acetylation and interaction with Keap1. Science Signaling, 8, ra120 (2015).

34. Sharma R, Dehzangi A, Lyons J, Paliwal K, Tsunoda T, Sharma A. Predict Gram-Positive and Gram-Negative Subcellular Localization via Incorporating Evolutionary Information and Physicochemical Features Into Chou's General PseAAC. IEEE Transactions on NanoBioscience, 14, 915-926 (2015).

35. Yokoi S, Ishihara N, Miya F, Tsutsumi M, Yanagihara I, Fujita N, Yamamoto H, Kato M, Okamoto N, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Kojima S, Saitoh S, Kurahashi H, Natsume J. TUBA1A mutation can cause a hydranencephaly-like severe form of cortical dysgenesis. Scientific Reports, 5, 15165 (2015).

36. Matsukura M, Ozaki K, Takahashi A, Onouchi Y, Morizono T, Komai H, Shigematsu H, Kudo T, Inoue Y, Kimura H, Hosaka A, Shigematsu K, Miyata T, Watanabe T, Tsunoda T, Kubo M, Tanaka T. Genome-Wide Association Study of Peripheral Arterial Disease in a Japanese Population. PLoS One, 10, e0139262 (2015).

37. Miya F, Mutai H, Fujii M, Boroevich KA, Matsunaga T, Tsunoda T. Gene expression profiling of DBA/2J mice cochleae treated with L-methionine and valproic acid. Genomics Data, 5, 323-325 (2015).

38. Parra EJ, Botton MR, Perini JA, Krithika S, Bourgeois S, Johnson TA, Tsunoda T, Pirmohamed M, Wadelius M, Limdi NA, Cavallari LH, Burmester JK, Rettie AE, Klein TE, Johnson JA, Hutz MH, Suarez-Kurtz G. Genome-wide association study of warfarin maintenance dose in a Brazilian sample. Pharmacogenomics, 16, 1253-1263 (2015).

39. Shigemizu D, Momozawa Y, Abe T, Morizono T, Boroevich KA, Takata S, Ashikawa K, Kubo M, Tsunoda T. Performance comparison of four commercial human whole-exome capture platforms. Scientific Reports, 5, 12742 (2015).

40. Shigemizu D, Aiba T, Nakagawa H, Ozaki K, Miya F, Satake W, Toda T, Miyamoto Y, Fujimoto A, Suzuki Y, Kubo M, Tsunoda T, Shimizu W, Tanaka T. Exome analyses of long QT syndrome reveal candidate pathogenic mutations in calmodulin-interacting genes. PLoS One, 10, e0130329 (2015).

41. Ono A, Fujimoto A, Yamamoto Y, Akamatsu S, Hiraga N, Imamura M, Kawaoka T, Tsuge M, Abe H, Hayes CN, Miki D, Furuta M, Tsunoda T, Miyano S, Kubo M, Aikata H, Ochi H, Kawakami YI, Arihiro K, Ohdan H, Nakagawa H, Chayama K. Circulating Tumor DNA Analysis for Liver Cancers and Its Usefulness as a Liquid Biopsy. Cellular and Molecular Gastroenterology and Hepatology, 1, 516-534 (2015).

42. Imai Y, Morita H, Takeda N, Miya F, Hyodo H, Fujita D, Tajima T, Tsunoda T, Nagai R, Kubo M, Komuro I. A deletion mutation in myosin heavy chain 11 causing familial thoracic aortic dissection in two Japanese pedigrees. International Journal of Cardiology, 195, 290-292 (2015).

43. Mutai H, Miya F, Fujii M, Tsunoda T, Matsunaga T. Attenuation of Progressive Hearing Loss in DBA/2J Mice by Reagents That Affect Epigenetic Modifications Is Associated with Up-Regulation of the Zinc Importer Zip4. PLoS One, 10, e0124301 (2015).

44. Miya F, Kato M, Shiohama T, Okamoto N, Saitoh S, Yamasaki M, Shigemizu D, Abe T, Morizono T, Boroevich KA, Kosaki K, Kanemura Y, Tsunoda T. A combination of targeted enrichment methodologies for whole-exome sequencing reveals novel pathogenic mutations, Scientific Reports, 5, 9331 (2015).

45. Nakamura K, Inui T, Miya F, Kanemura Y, Okamoto N, Saitoh S, Yamasaki M, Tsunoda T, Kosaki K, Tanaka S, Kato M. Primary microcephaly with anterior predominant pachygyria caused by novel compound heterozygous mutations in ASPM. Pediatric Neurology, 52, e7-8 (2015).

46. Fujimoto A, Furuta M, Shiraishi Y, Gotoh K, Kawakami Y, Arihiro K, Nakamura T, Ueno M, Ariizumi S, Nguyen HH, Shigemizu D, Abe T, Boroevich KA, Nakano K, Sasaki A, Kitada R, Maejima K, Yamamoto Y, Tanaka H, Shibuya T, Shibata T, Ojima H, Shimada K, Hayami S, Shigekawa Y, Aikata H, Ohdan H, Marubashi S, Yamada T, Kubo M, Hirano S, Ishikawa O, Yamamoto M, Yamaue H, Chayama K, Miyano S, Tsunoda T*, Nakagawa H*. (*: co-corresponding). Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity. Nature Communications, 6, 6120 (2015).
47. Shiraishi Y, Fujimoto A, Furuta M, Tanaka H, Chiba K, Boroevich KA, Abe T, Kawakami Y, Ueno M, Gotoh K, Ariizumi S, Shibuya T, Nakano K, Sasaki A, Maejima K, Kitada R, Hayami S, Shigekawa Y, Marubashi S, Yamada T, Kubo M, Ishikawa O, Aikata H, Arihiro K, Ohdan H, Yamamoto M, Yamaue H, Chayama K, Tsunoda T, Miyano S, Nakagawa H. Integrated analysis of whole genome and transcriptome sequencing reveals diverse transcriptomic aberrations driven by somatic genomic changes in liver cancers. PLoS One, 9, e114263 (2014).

48. Negishi Y+, Miya F+ (co-first), Hattori A, Mizuno K, Hori I, Ando N, Okamoto N, Kato M, Tsunoda T, Yamasaki M, Kanemura Y, Kosaki K, Saitoh S. Truncating mutation in NFIA causes brain malformation and urinary tract defects. Human Genome Variation, 2, 15007 (2015).

49. He M+, Xu M+, Zhang B+, Liang J+, Chen P+, Lee JY+, Johnson TA+, Li H+, Yang X+, Dai J+, Liang L+ (+: co-first), Gui L, Qi Q, Huang J, Li Y, Adair LS, Aung T, Cai Q, Cheng CY, Cho MC, Cho YS, Chu M, Cui B, Gao YT, Go MJ, Gu D, Gu W, Guo H, Hao Y, Hong J, Hu Z, Hu Y, Huang J, Hwang JY, Ikram MK, Jin G, Kang DH, Khor CC, Kim BJ, Kim HT, Kubo M, Lee J, Lee J, Lee NR, Li R, Li J, Liu J, Long J, Lu W, Lu X, Miao X, Okada Y, Ong RT, Qiu G, Seielstad M, Sim X, Song H, Takeuchi F, Tanaka T, Taylor PR, Wang L, Wang W, Wang Y, Wu C, Wu Y, Xiang YB, Yamamoto K, Yang H, Liao M, Yokota M, Young T, Zhang X, Kato N, Wang QK, Zheng W, Hu FB, Lin D, Shen H*, Teo YY*, Mo Z*, Wong TY*, Lin X*, Mohlke KL*, Ning G*, Tsunoda T*, Han BG*, Shu XO*, Tai ES*, Wu T*, Qi L* (*: co-last). Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. Human Molecular Genetics, 24, 1791-1800 (2015).

50. Harada A, Miya F, Utsunomiya H, Kato M, Yamanaka T, Tsunoda T, Kosaki K, Kanemura Y, Yamasaki M. Sudden death in a case of megalencephaly capillary malformation associated with a de novo mutation in AKT3. Childs Nervous System, 31, 465-471 (2015).

51. Saloura V, Cho HS, Kiyotani K, Alachkar H, Zuo Z, Nakakido M, Tsunoda T, Seiwert T, Lingen M, Licht J, Nakamura Y, Hamamoto R. WHSC1 Promotes Oncogenesis through Regulation of NIMA-related-kinase-7 in Squamous Cell Carcinoma of the Head and Neck. Molecular Cancer Research, 13, 293-304 (2015).

52. Okamoto N, Miya F, Tsunoda T, Yanagihara K, Kato M, Saitoh S, Yamasaki M, Kanemura Y, Kosaki K. KIF1A mutation in a patient with progressive neurodegeneration. Journal of Human Genetics, 59, 639-641 (2014).

53. Okamoto N, Miya F, Tsunoda T, Kato M, Saitoh S, Yamasaki M, Shimizu A, Torii C, Kanemura Y, Kosaki K. Targeted next-generation sequencing in the diagnosis of neurodevelopmental disorders. Clinical Genetics, 88, 288-292 (2015).

54. Sinner MF, Tucker NR, Lunetta KL, Ozaki K, Smith JG, Trompet S, Bis JC, Lin H, Chung MK, Nielsen JB, Lubitz SA, Krijthe BP, Magnani JW, Ye J, Gollob MH, Tsunoda T, Müller-Nurasyid M, Lichtner P, Peters A, Dolmatova E, Kubo M, Smith JD, Psaty BM, Smith NL, Jukema JW, Chasman DI, Albert CM, Ebana Y, Furukawa T, MacFarlane P, Harris TB, Darbar D, Dörr M, Holst AG, Svendsen JH, Hofman A, Uitterlinden A, Gudnason V, Isobe M, Malik R, Dichgans M, Rosand J, Van Wagoner DR; METASTROKE Consortium; AFGen Consortium, Benjamin EJ, Milan DJ, Melander O, Heckbert S, Ford I, Liu Y, Barnard J, Olesen MS, Stricker BH, Tanaka T, Kääb S, Ellinor PT. Integrating Genetic, Transcriptional, and Functional Analyses to Identify Five Novel Genes for Atrial Fibrillation. Circulation, 130, 1225-1235 (2014).

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206. T.Nishidate, T.Katagiri, M.L.Lin, Y.Mano, Y.Miki, F.Kasumi, M.Yoshimoto, T.Tsunoda, K.Hirata, and Y.Nakamura. Genome-wide gene-expression profiles of breast-cancer cells purified with laser microbeam microdissection: Identification of genes associated with progression and metastasis. International Journal of Oncology, 25, 797-819 (2004).

207. Y.Harima, A.Togashi, K.Horikoshi, M.Imamura, M.Sougawa, S.Sawada, T.Tsunoda, Y.Nakamura, and T.Katagiri. Prediction of outcome of advanced cervical cancer to thermoradiotherapy according to expression profiles of 35 genes selected by cDNA microarray analysis. International Journal of Radiation Oncology Biology Physics, 60, 237-248 (2004).

208. N.Jinawath, Y.Furukawa, S.Hasegawa, M.Li, T.Tsunoda, S.Satoh, T.Yamaguchi, H.Imamura, M.Inoue, H.Shiozaki, and Y.Nakamura. Comparison of gene-expression profiles between diffuse- and intestinal-type gastric cancers using a genome-wide cDNA microarray. Oncogene, 23, 6830-6844 (2004).

209. M.Onda, M.Emi, H.Nagai, T.Nagahata, K.Tsumagari, T.Fujimoto, F.Akiyama, G.Sakamoto, M.Makita, F.Kasumi, Y.Miki, T.Tanaka, T.Tsunoda, and Y.Nakamura. Gene expression patterns as marker for 5-year postoperative prognosis of primary breast cancers. Journal of Cancer Research and Clinical Oncology, 130, 537-545 (2004).

210. T.Nakamura, Y.Furukawa, H.Nakagawa, T.Tsunoda, H.Ohigashi, K.Murata, O.Ishikawa, K.Ohgaki, N.Kashimura, M.Miyamoto, S.Hirano, S.Kondo, H.Katoh, Y.Nakamura, and T.Katagiri. Genome-wide cDNA microarray analysis of gene expression profiles in pancreatic cancers using populations of tumor cells and normal ductal epithelial cells selected for purity by laser microdissection. Oncogene, 23, 2385-2400 (2004).

211. K.Ochi, Y.Daigo, T.Katagiri, S.Nagayama, T.Tsunoda, A.Myoui, N.Naka, N.Araki, I.Kudawara, M.Ieguchi, Y.Toyama, J.Toguchida, H.Yoshikawa, and Y.Nakamura. Prediction of response to neoadjuvant chemotherapy for osteosarcoma by gene-expression profiles. International Journal of Oncology, 24, 647-655 (2004).

212. Y.Kochi, R.Yamada, K.Kobayashi, A.Takahashi, A.Suzuki, A.Sekine, A.Mabuchi, F.Akiyama, T.Tsunoda, Y.Nakamura, and K.Yamamoto. Analysis of single-nucleotide polymorphisms in Japanese rheumatoid arthritis patients shows additional susceptibility markers besides the classic shared epitope susceptibility sequences. Arthritis & Rheumatism, 50, 63-71 (2004).

213. M.Li, Y-M.Lin, S.Hasegawa, T.Shimokawa, K.Murata, M.Kameyama, O.Ishikawa, T.Katagiri, T.Tsunoda, Y.Nakamura, and Y.Furukawa. Genes associated with liver metastasis of colon cancer, identified by genome-wide cDNA microarray. International Journal of Oncology, 24, 305-312 (2004).

214. The International HapMap Consortium. The International HapMap Project. Nature, 426, 789-796 (2003).

215. S.Tokuhiro, R.Yamada, X.Chang, A.Suzuki, Y.Kochi, T.Sawada, M.Suzuki, M.Nagasaki, M.Ohtsuki, M.Ono, H.Furukawa, M.Nagashima, S.Yoshino, A.Mabuchi, A.Sekine, S.Saito, A.Takahashi, T.Tsunoda, Y.Nakamura, and K.Yamamoto. An intronic SNP in a RUNX1 binding site of SLC22A4, encoding an organic cation transporter, is associated with rheumatoid arthritis. Nature Genetics, 35, 341-348 (2003).

216. A.Suzuki, R.Yamada, X.Chang, S.Tokuhiro, T.Sawada, M.Suzuki, M.Nagasaki, M.Nakayama-Hamada, R.Kawaida, M.Ono, M.Ohtsuki, H.Furukawa, S.Yoshino, M.Yukioka, S.Touma, T.Matsubara, S.Wakitani, R.Teshima, A.Sekine, A.Iida, A.Takahashi, T.Tsunoda, Y.Nakamura, and K.Yamamoto. Functional haplotypes of citrullinating enzyme, peptidylarginine deiminase 4 are associated with rheumatoid arthritis. Nature Genetics, 34, 395-402 (2003).

217. N.Tanaka, T.Babazono, S.Saito, A.Sekine, T.Tsunoda, M.Haneda, Y.Tanaka, T.Fujioka, K.Kaku, R.Kawakami, R.Kikkawa, Y.Iwamoto, Y.Nakamura, and S.Maeda. Association of solute carrier family 12 (Sodium/Chloride) member 3 with diabetic nephropathy, identified by genome-wide analysis of single nucleotide polymorphisms. Diabetes, 52, 2848-2853 (2003).

218. K.Okada, T.Katagiri, T.Tsunoda, Y.Mizutani, Y.Suzuki, M.Kamada, T.Fujioka, T.Shuin, T.Miki, and Y.Nakamura. Analysis of gene-expression profiles in testicular seminomas using a genome-wide cDNA microarray. International Journal of Oncology, 23, 1615-1635 (2003).

219. Y.Kaneta, Y.Kagami, T.Tsunoda, R.Ohno, Y.Nakamura, and T.Katagiri. Genome-wide analysis of gene-expression profiles in chronic myeloid leukemia cells using a cDNA microarray. International Journal of Oncology, 23, 681-691 (2003).

220. K.Ochi, Y.Daigo, T.Katagiri, A.Saito-Hisaminato, T.Tsunoda, Y.Toyama, H.Matsumoto, and Y.Nakamura. Expression profiles of two types of human knee-joint cartilage. Journal of Human Genetics, 48, 177-182 (2003).

221. S.Kakiuchi, Y.Daigo, T.Tsunoda, S.Yano, S.Sone, and Y.Nakamura. Genome-wide analysis of organ-preferential metastasis of human small cell lung cancer in mice. Molecular Cancer Research, 1, 485-499 (2003).

222. T.Kikuchi, Y.Daigo, T.Katagiri, T.Tsunoda, K.Okada, S.Kakiuchi, H.Zembutsu, Y.Furukawa, M.Kawamura, K.Kobayashi, K.Imai, and Y.Nakamura. Expression profiles of non-small cell lung cancers on cDNA microarrays: Identification of genes for prediction of lymph node metastasis and sensitivity to anti-cancer drugs. Oncogene, 22, 2192-2205 (2003).

223. W.Obara, A.Iida, Y.Suzuki, T.Tanaka, F.Akiyama, S.Maeda, Y.Ohnishi, R.Yamada, T.Tsunoda, T.Takei, K.Ito, K.Honda, K.Uchida, K.Tsuchiya, W.Yumura, T.Ujiie, Y.Nagane, K.Nitta, S.Miyano, I.Narita, F.Gejyo, H.Nihei, T.Fujioka, and Y.Nakamura. Association of single-nucleotide polymorphisms in the polymeric immunoglobulin receptor gene with Immunoglobulin A nephropathy (IgAN) in Japanese patients. Journal of Human Genetics, 48, 293-299 (2003).

224. T.Arimoto, T.Katagiri, K.Oda, T.Tsunoda, T.Yasugi, Y.Osuga, H.Yoshikawa, O.Nishii, T.Yano, Y.Taketani, and Y.Nakamura. Genome-wide cDNA microarray analysis of gene-expression profiles involved in ovarian endometriosis. International Journal of Oncology, 22, 551-560 (2003).

225. K.Ozaki, Y.Ohnishi, A.Iida, A.Sekine, R.Yamada, T.Tsunoda, H.Sato, H.Sato, M.Hori, Y.Nakamura, and T.Tanaka. Functional SNPs in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction. Nature Genetics, 32, 650-654 (2002).

226. S.Abe, T.Katagiri, A.Saito-Hisaminato, S.Usami, Y.Inoue, T.Tsunoda, and Y.Nakamura. Identification of CRYM as a candidate responsible for non-syndromic deafness, through cDNA microarray analysis of human cochlear and vestibular tissues. American Journal of Human Genetics, 72, 73-82 (2002).

227. T.Takei, A.Iida, K.Nitta, T.Tanaka, Y.Ohnishi, R.Yamada, S.Maeda, T.Tsunoda, S.Takeoka, K.Ito, K.Honda, K.Uchida, K.Tsuchiya, Y.Suzuki, T.Fujioka, T.Ujiie, Y.Nagane, S.Miyano, I.Narita, F.Gejyo, H.Nihei, and Y.Nakamura. Association between single-nucleotide polymorphisms in selectin genes and IgA nephropathy. American Journal of Human Genetics, 70, 781-786 (2002).

228. S.Hasegawa, Y.Furukawa, M.Li, S.Satoh, T.Kato, T.Watanabe, T.Katagiri, T.Tsunoda, Y.Yamaoka, and Y.Nakamura. Genome-Wide Analysis of Gene Expression in Intestinal-Type Gastric Cancers Using a Complementary DNA Microarray Representing 23,040 Genes. Cancer Research, 62, 7012-7017 (2002).

229. S.Nagayama, T.Katagiri, T.Tsunoda, T.Hosaka, Y.Nakashima, N.Araki, K.Kusazaki, T.Nakayama, T.Tsuboyama, T.Nakamura, M.Imamura, Y.Nakamura, and J.Toguchida. Genome-wide Analysis of Gene Expression in Synovial Sarcomas Using a cDNA Microarray. Cancer Research, 62, 5859-5866 (2002).

230. S.Dan, T.Tsunoda, O.Kitahara, R.Yanagawa, H.Zembutsu, T.Katagiri, K.Yamazaki, Y.Nakamura, and T.Yamori. An integrated database of chemosensitivity to 55 anticancer drugs and gene expression profiles of 39 human cancer cell lines. Cancer Research, 62, 1139-1147 (2002).

231. H.Zembutsu, Y.Ohnishi, T.Tsunoda, Y.Furukawa, T.Katagiri, Y.Ueyama, N.Tamaoki, T.Nomura, O.Kitahara, R.Yanagawa, K.Hirata, and Y.Nakamura. Genome-wide cDNA Microarray Screening to Correlate Gene Expression Profiles with Sensitivity of 85 Human Cancer Xenografts to Anticancer Drugs. Cancer Research, 62, 518-527 (2002).

232. J.Okutsu, T.Tsunoda, Y.Kaneta, T.Katagiri, O.Kitahara, H.Zembutsu, R.Yanagawa, S.Miyawaki, K.Kuriyama, N.Kubota, Y.Kimura, K.Kubo, F.Yagasaki, T.Higa, H.Taguchi, T.Tobita, H.Akiyama, A.Takeshita, Y.Wang, T.Motoji, R.Ohno, and Y.Nakamura. Prediction of Chemosensitivity for Patients with Acute Myeloid Leukemia, According to Expression Levels of 28 Genes Selected by Genome-wide Complementary DNA Microarray Analysis. Molecular Cancer Therapeutics, 1, 1035-1042 (2002).

233. F.Akiyama, T.Tanaka, R.Yamada, Y.Ohnishi, T.Tsunoda, S.Maeda, T.Takei, W.Obara, K.Ito, K.Honda, K.Uchida, K.Tsuchiya, K.Nitta, W.Yumura, H.Nihei, T.Ujiie, Y.Nagane, S.Miyano, Y.Suzuki, T.Fujioka, I.Narita, F.Gejyo, and Y.Nakamura. Single-nucleotide polymorphisms in the class II region of the major histocompatibility complex in Japanese patients with immunoglobulin A nephropathy. Journal of Human Genetics, 47, 532-538 (2002).

234. H.Ishiguro, T.Shimokawa, T.Tsunoda, T.Tanaka, Y.Fujii, Y.Nakamura, and Y.Furukawa. Isolation of HELAD1, a novel human helicase gene up-regulated in colorectal carcinomas. Oncogene, 21, 6387-6394 (2002).

235. Y.Kaneta, Y.Kagami, T.Katagiri, T.Tsunoda, I.Jin-nai, H.Taguchi, H.Hirai, K.Ohnishi, T.Ueda, N.Emi, A.Tomida, T.Tsuruo, Y.Nakamura, and R.Ohno. Prediction of Sensitivity to STI571 among Chronic Myeloid Leukemia Patients by Genome-wide cDNA Microarray Analysis. Cancer Science, 93, 849-856 (2002).

236. M.Nishiu, R.Yanagawa, S.Nakatsuka, M.Yao, T.Tsunoda, Y.Nakamura, and K.Aozasa. Microarray Analysis of Gene-expression Profiles in Diffuse Large B-cell Lymphoma: Identification of Genes Related to Disease Progression. Cancer Science, 93, 894-901 (2002).

237. M.Takahashi, T.Tsunoda, M.Seiki, Y.Nakamura, and Y.Furukawa. Identification of membrane-type matrix metalloproteinase-1 as a target of the beta-catenin/Tcf4 complex in human colorectal cancers. Oncogene, 21, 5861-5867 (2002).

238. O.Kitahara, T.Katagiri, T.Tsunoda, Y.Harima, and Y.Nakamura. Classification of Sensitivity or Resistance of Cervical Cancers to Ionizing Radiation According to Expression Profiles of 62 Genes Selected by cDNA Microarray Analysis. Neoplasia, 4, 295-303 (2002).

239. Y-M.Lin, Y.Furukawa, T.Tsunoda, C-T.Yue, K-C.Yang, and Y.Nakamura. Molecular Diagnosis of Colorectal Tumors by Expression Profiles of 50 Genes Expressed Differentially in Adenomas and Carcinomas. Oncogene, 21, 4120-4128 (2002).

240. M.Iizaka, Y.Furukawa, T.Tsunoda, H.Akashi, M.Ogawa, and Y.Nakamura. Expression Profile Analysis of Colon Cancer Cells in Response to Sulindac or Aspirin. Biochemical and Biophysical Research Communications, 292, 498-512 (2002).

241. A.Saito-Hisaminato, T.Katagiri, S.Kakiuchi, T.Nakamura, T.Tsunoda, and Y.Nakamura. Genome-Wide Profiling of Gene Expression in 29 Normal Human Tissues with a cDNA Microarray. DNA Research, 9, 35-45 (2002).

242. M.Nakamura, T.Tsunoda, and J.Obokata. Photosynthesis nuclear genes generally lack TATA-boxes: a tobacco photosystem I gene responses light through an initiator. The Plant Journal, 29, 1-10 (2002).

243. C.Kihara+, T.Tsunoda+, T.Tanaka, H.Yamana, Y.Furukawa, K.Ono, O.Kitahara, H.Zenbutsu, R.Yanagawa, K.Hirata, T.Takagi, and Y.Nakamura. Prediction of Sensitivity of Esophageal Tumors to Adjuvant Chemotherapy by cDNA Microarray Analysis of Gene-Expression Profiles. Cancer Research, 61, 6474-6479 (2001). (+ equally contributed).

244. O.Kitahara, Y.Furukawa, T.Tanaka, C.Kihara, K.Ono, R.Yanagawa, M.E.Nita, T.Takagi, Y.Nakamura, and T.Tsunoda. Alterations of Gene Expression During Colorectal Carcinogenesis Revealed by cDNA Microarrays after Laser-Capture Microdissection of Tumor Tissues and Normal Epithelia. Cancer Research, 61, 3544-3549 (2001).

245. R.Yamada, T.Tanaka, M.Unoki, T.Nagai, T.Sawada, Y.Ohnishi, T.Tsunoda, M.Yukioka, A.Maeda, K.Suzuki, H.Tateishi, T.Ochi, Y.Nakamura, and K.Yamamoto. Association between a Single-Nucleotide Polymorphism in the Promoter of the Human Interleukin-3 Gene and Rheumatoid Arthritis in Japanese Patients, and Maximum-likelihood Estimation of Combinatorial Effect That Two Genetic Loci Have on Susceptibility to the Disease. American Journal of Human Genetics, 68, 674-685 (2001).

246. M.Fujita, Y.Furukawa, T.Tsunoda, T.Tanaka, M.Ogawa, and Y.Nakamura. Up-Regulation of the Ectodermal-Neural Cortex (ENC1) Gene, a Downstream Target of the Beta-Catenin/T-Cell Factor Complex, in Colorectal Carcinomas. Cancer Research, 61, 7722-7726 (2001).

247. Y-M.Lin, K.Ono, S.Satoh, H.Ishiguro, M.Fujita, N.Miwa, T.Tanaka, T.Tsunoda, K-C.Yang, Y.Nakamura, and Y.Furukawa. Identification of AF17 as a downstream gene of the beta-catenin/Tcf pathway, and its involvement in colorecatal carcinogenesis. Cancer Research, 61, 6345-6349 (2001).

248. M.Matsushima-Nishiu, M.Unoki, K.Ono, T.Tsunoda, T.Minaguchi, H.Kuramoto, M.Nishida, T.Satoh, T.Tanaka, and Y.Nakamura. Growth and Gene-Expression Profile Analysis of Endometrial Cancer Cells Expressing Exogenous PTEN. Cancer Research, 61, 3741-3749 (2001).

249. H.Okabe, S.Satoh, T.Kato, O.Kitahara, R.Yanagawa, Y.Yamaoka, T.Tsunoda, Y.Furukawa, and Y.Nakamura. Genome-Wide Analysis of Gene Expression in Human Hepatocellular Carcinomas Using cDNA Microarray: Identification of Genes Involved in Viral Carcinogenesis and Tumor Progression. Cancer Research, 61, 2129-2137 (2001).

250. R.Yanagawa, Y.Furukawa, T.Tsunoda, O.Kitahara, K.Murata, O.Ishikawa, and Y.Nakamura. Genome-wide Screening of Genes Showing Altered Expression in Liver Metastasis of Human Colorectal Cancers by cDNA Microarray. Neoplasia, 3, 395-401 (2001).

251. H.Ishiguro, Y.Furukawa, T.Tsunoda, T.Tanaka, Y.Fujii, and Y.Nakamura. Identification of AXUD1, a novel human gene induced by AXIN1 and involved in human carcinogenesis of the lung, liver, colon, and kidney. Oncogene, 20, 5062-5066 (2001).

252. Y.Suzuki, T.Tsunoda, J.Sese, H.Taira, J. Mizushima-Sugano, H.Hata, T.Ota, T.Isogai, T.Tanaka, Y.Nakamura, A.Suyama, Y.Sakaki, S.Morishita, K.Okubo, and S.Sugano. Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes. Genome Research, 11, 677-684 (2001).

253. Y.Suzuki, H.Taira, T.Tsunoda, J. Mizushima-Sugano, J.Sese, H.Hata, T.Ota, T.Isogai, T.Tanaka, S.Morishita, K.Okubo, Y.Sakaki, Y.Nakamura, A.Suyama, and S.Sugano. Diverse Transcriptional Initiation Revealed by Fine, Large-Scale Mapping of the mRNA Start Sites. EMBO reports, 2, 388-393 (2001).

254. T.Kato, S.Satoh, H.Okabe, O.Kitahara, K.Ono, C.Kihara, T.Tanaka, T.Tsunoda, Y.Yamaoka, Y.Nakamura, and Y.Furukawa. Isolation of a novel human gene, MARKL1, homologous to MARK3 and its involvement in hepatocellular carcinogenesis. Neoplasia, 3, 4-9 (2001).

255. T.Tsunoda, R.Yamada, T.Tanaka, Y.Ohnishi, and N.Kamatani. Environmental Factor Dependent Maximum Likelihood Method for Association Study Targeted to Personalized Medicine. Genome Informatics, 11, 96-105 (2000).
256. M.Kato, T.Tsunoda, and T.Takagi. Inferring Genetic Networks from DNA Microarray Data by Multiple Regression Analysis. Genome Informatics, 11, 118-128 (2000).

257. K.Ono, T.Tanaka, T.Tsunoda, O.Kitahara, C.Kihara, A.Okamoto, K.Ochiai, T.Takagi, and Y.Nakamura. Identification by cDNA Microarray of Genes Involved in Ovarian Carcinogenesis. Cancer Research, 60, 5007-5011 (2000).

258. Y.Ajima, K.Anraku, T.Haga, Y.Higashi, H.Honda, M.Imori, S.Inaba, N.Kimura, M.Kobayashi, Y.Makida, N.Matsui, H.Matsumoto, H.Matsunaga, M.Motoki, M.Nozaki, Y.Nishihara, J.Nishimura, S.Orito, M.Otoba, T.Saeki, T.Sanuki, M.Sasaki, K.Shimamura, J.Suzuki, K.Suzuki, N.Takimi, K.Tanaka, T.Tsunoda, I.Ueda, T.Yajima, T.Yamagami, A.Yamamoto, H.Yamaoka, T.Yoshida, and K.Yoshimura. A Superconducting Solenoidal Spectrometer for a Balloon-borne Experiment. Nuclear Instruments & Methods in Physics Research Section A – Accelerators Spectrometers Detectors and Associated Equipment, 443, 71-100 (2000).

259. T.Tsunoda, and T.Takagi. Estimating Transcription Factor Bindability on DNA. Bioinformatics, 15, 622-630 (1999).

260. T.Tsunoda, M.Fukagawa, and T.Takagi. Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences. Pacific Symposium on Biocomputing, 202-213 (1999).

261. T.Tsunoda, and T.Takagi. Automatic Extraction of Position Specific Cooccurrence of Transcription Factor Bindings on Promoters. Pacific Symposium on Biocomputing, 252-263 (1998).

262. K.Fukuda, T.Tsunoda, A.Tamura, and T.Takagi. Toward Information Extraction: Identifying protein names from biological papers. Pacific Symposium on Biocomputing, 705-716 (1998).

263. K.Fukuda, T.Tsunoda, A.Tamura, T.Takagi. Extracting Technical Terms from Medical and Biological Articles. Transactions of Information Processing Society of Japan, 39, 2421-2430 (1998).

264. T.Tsunoda, T.Oishi, Y.Watanabe and M.Nagao. Automatic Alignment between TV News and Newspaper Articles by Maximum Length String Matching between Captions and Article Texts. Transactions of Information Processing Society of Japan, 38, 1149-1162 (1997).

265. T.Tsunoda and M.Hashiba. Disambiguation of Noun Sense by Scene Knowledge Based on Pictorial Dictionary and LDOCE Subject-Codes. Transactions of Information Processing Society of Japan, 38, 235-244 (1997).

266. M.Matsumoto, T.Tsunoda and Y.Matsumoto. A Coding Scheme which Enables Fast Direct Search in Compressed Files. The Transactions of the Institute of Electronics, Information and Communication Engineers A, J80-A, 969-976 (1997).

267. K.Araya, T.Tsunoda, T.Oishi and M.Nagao. Retrieval Method of Relevant Newspaper Articles Using Words' Cooccurrence Frequency and their Position. Transactions of Information Processing Society of Japan, 38, 855-862 (1997).

268. Y.Watanabe, Y.Okada, T.Tsunoda and M.Nagao. Aligning Articles in TV Newscasts and Newspapers. Journal of Japanese Society for Artificial Intelligence, 12, 921-927 (1997).

269. T.Tsunoda and H.Tanaka. Evaluation of Scene Information as Context for English Noun Disambiguation. Journal of Natural Language Processing, 3, 3-27 (1996).

270. T.Tsunoda, S.Nakamura, S.Orito and M.Minowa. A Search for Back-to-Back e+e- Pairs in the Spontaneous-Fission Disintegration of 252Cf. Europhys. Lett, 30, 273-276 (1995).

271. T.Tsunoda and H.Tanaka. Analysis of Scene Identification Ability of Associative Memory with Pictorial Dictionary. The 15th International Conference on Computational Linguistics (COLING 1994), 310-316 (1994).

272. K.Anraku, T.Haga, M.Imori, M.Nozaki, S.Orito, K.Shimamura, T.Tsunoda, T.Yoshida, K.Yoshimura, Y.Ajima, H.Ikeda, S.Inaba, T.Haruyama, Y.Higashi, Y.Makida, J.Suzuki, A.Yamamoto, J.Nishimura, T.Yamaguchi, R.Golden, and B.Kimbell. Search for Antiparticlees of Cosmic Origin with a Superconducting Sepectrometer. Advances in Space Research, 13, 169-172 (1993).

273. M.Imori, K.Anraku, S.Inaba, I.Ueda, T.Saeki, T.Haga, T.Tsunoda, M.Nozaki, T.Yamagami, T.Yoshida and K.Yoshimura. Real-Time Data Processes in a Balloon-borne Apparatus. IEEE Transactions on Nuclear Science, 39, 1389-1393 (1992).

274. K.Anraku, M.Imori, T.Saeki, I.Ueda, S.Inaba, K.Shimamura, M.Nozaki, T.Tsunoda and T.Yoshida. A Flash ADC System with Fast Data Compression for a Balloon-borne Experiment. IEEE Transactions on Nuclear Science, 39, 987-992 (1992).

275. T.Asanuma, M.Minowa, T.Tsukamoto, S.Orito and T.Tsunoda. A Search for Correlated e+e- Pairs in the Decay of 241Am. Physics Letters B, 237, 588-591 (1990).