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  4. Akihiko Nakano

A02-2

Principal Investigator
Akihiko Nakano
RIKEN Center for Advanced Photonics, Live Cell Super-Resolution Imaging Research Team

 

A02-2　Co-investigator
Kazuo Kurokawa
RIKEN Center for Advanced Photonics, Live Cell Super-Resolution Imaging Research Team

Study of the sorting zone for GPI-anchored proteins at ER exit sites

Research abstract

We will investigate presence of a sorting zone for GPI-anchored proteins at ER exit sites by super-resolution confocal live imaging microscopy (SCLIM) we developed. We have already shown that secretory cargo once accumulates at the ER exit sites (ERES), where COPII coats assemble, and is then handed over to the cis-Golgi cisternae by direct contact named “hug-and-kiss” action (Nat Comm 2014). Possibilities that different ERES may be used for different cargoes will be tested by live imaging of yeast cells, using GPI-anchored and non-GPI-anchored proteins labeled with different fluorescent proteins. If they go to different ERES then the next question will be whether they move on to different Golgi cisternae. Pulse-chase imaging methods we invented will be used in combination with the next-generation SCLIM, which has achieved extremely high spatiotemporal resolution.

Original papers

Principal investigator、Co-investigator

  1. Shimizu, Y., Takagi, J., Ito, E., Ito, Y., Ebine, K., Komatsu, Y., Goto, Y., Sato, M., Toyooka, K., Ueda, T., Kurokawa, K., Uemura, T., and Nakano, A. (2021). Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants. Nat. Commun. 12:1901.
  2. Rizzo, R., Russo, D., Kurokawa, K., Sahu, P., Lombardi, B., Supino, D., Zhukovsky, M. A., Vocat, A., Pothukuchi, P., Kunnathully, V., Capolupo, L., Boncompain, G., Vitagliano, C., Marino, F. Z., Aquino, G., Montariello, D., Henklein, P., Mandrich, L., Botti, G., Clausen, H., Mandel, U., Yamaji, T., Hanada, K., Budillon, A., Perez, F., Parashuraman, S., Hannun, Y. A., Nakano, A., Corda, D., D’Angelo, G., and Luini, A. (2021). Golgi maturation-dependent glycoenzyme recycling controls glycosphingolipid biosynthesis and cell growth via GOLPH3. EMBO J. 40:e107238.
  3. Fujii, S., Kurokawa, K., Tago, T., Inaba, R., Takiguchi, A., Nakano, A., Satoh, T., and Satoh, A. (2020). Sec71 separates Golgi stacks in Drosophila S2 cells. J. Cell Sci. 133:jcs245571.
  4. Kanazawa, T., Morinaka, H., Ebine, K., Shimada, T. L., Ishida, S., Minamino, N., Yamaguchi, K., Shigenobu, S., Kohchi, T., Nakano, A., and Ueda, T. (2020). The liverwort oil body is formed by redirection of the secretory pathway. Nat. Commun. 11:6152.
  5. Rodriguez-Gallardo, S.†, Kurokawa, K.†, Sabido-Bozo, S., Cortes-Gomez, A., Ikeda, A., Zoni, V., Aguilera-Romero, A., Maria Perez-Linero, A., Lopez, S., Waga, M., Araki, M., Nakano, M., Riezman, H., Funato, K., Vanni, S., Nakano, A., and Muñiz, M. (2020). Ceramide chain length-dependent protein sorting into selective endoplasmic reticulum exit sites. Sci. Adv. 6:eaba8237. († equal contribution)
  6. Ikeda, A., Schlarmann, P., Kurokawa, K., Nakano, A., Riezman, H., and Funato, K. (2020). Tricalbins are required for nonvesicular ceramide transport at ER-Golgi contacts and modulate lipid droplet biogenesis. iScience 23:101603.
  7. Murakami-Sekimata, A., Sekimata, M., Sato, N., Hayasaka, Y., and Nakano, A. (2020). Deletion of pin4 suppresses the protein transport defects caused by sec12-4 mutation in Saccharomyces cerevisiae. Microbial Physiol. 30:25-35.
  8. Fujii, S., Kurokawa, K., Inaba, R., Hiramatsu, N., Tago, T., Nakamura, Y., Nakano, A., Satoh, T., and Satoh, A. K. (2020). Recycling endosomes attach to the trans-side of Golgi stacks in Drosophila and mammalian cells. J. Cell Sci. 133: jcs236935.
  9. Ishii, A., Kurokawa, K., Hotta, M., Yoshizaki, S., Kurita, M., Koyama, A., Nakano, A., and Kimura, Y. (2019). Role of Atg8 in the regulation of vacuolar membrane invagination. Sci. Rep. 9:14828.
  10. Shimada, T. L., Shimada, T., Okazaki, Y., Higashi, Y., Saito, K., Kuwata, K., Oyama, K., Kato, M., Ueda, H., Nakano, A., Ueda, T., Takano, Y., and Hara-Nishimura, I. (2019). HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis. Nat. Plants 5:1154-1166.

  11. Tojima, T., Suda, Y., Ishii, M., Kurokawa, K., and Nakano, A. (2019). Spatiotemporal dissection of the trans-Golgi network in budding yeast. J. Cell Sci. 132:jcs231159.

  12. Maeda, M., Kurokawa, K., Katada, T., Nakano, A., and Saito, K. (2019). COPII proteins exhibit distinct subdomains within each ER exit site for executing their functions. Sci. Rep. 9:7346.

  13. Shimada, T. L., Betsuyaku, S., Inada, N., Ebine, K., Fujimoto, M., Uemura, T., Takano, Y., Fukuda, H., Nakano, A., and Ueda, T. (2019). Enrichment of phosphatidylinositol 4,5-bisphosphate in the extra-invasive hyphal membrane promotes Colletotrichum infection of Arabidopsis thaliana. Plant Cell Physiol. 60:1514-1524.

  14. Abe, M., Kosaka, S., Shibuta, M., Nagata, K., Uemura, T., Nakano, A., and Kaya, H. (2019). Transient activity of the florigen complex during the floral transition in Arabidopsis thaliana. Development 146:dev171504.
  15. Kurokawa, K., Osakada, H., Kojidani, T., Waga, M., Suda, Y., Asakawa, H., Haraguchi, T., and Nakano, A. (2019). Visualization of secretory cargo transport within the Golgi apparatus in living yeast cells. J. Cell Biol. 218:1602-1618.
  16. Uemura, T., Nakano, R. T., Takagi, J., Wang, Y., Kramer, K., Finkemeier, I., Nakagami, H., Tsuda, K., Ueda, T., Schulze-Lefert, P., and Nakano, A. (2019). A Golgi-released subpopulation of the trans-Golgi network mediates protein secretion in Arabidopsis. Plant Physiol. 179:519-532.

  17. Muro, K., Matsuura-Tokita, K., Tsukamoto, R., Kanaoka, M. M., Ebine, K., Higashiyama, T., Nakano, A., and Ueda, T. (2018) ANTH domain-containing proteins are required for the pollen tube plasma membrane integrity via recycling ANXUR kinases. Commun. Biol. 1:152.

  18. Ishikawa, K., Tamura, K., Ueda, H., Ito, Y., Nakano, A., Hara-Nishimura, I., and Shimada, T. (2018) The synaptotagmin-associated ER-plasma membrane contact sites are distributed to immobile ER tubules. Plant Physiol. 178:641-653.

  19. Haraguchi, T., Ito, K., Duan, Z., Sa, R., Takahashi, K., Shibuya, Y., Hagino, N., Miyatake, Y., Nakano, A., and Tominaga, M. (2018) Functional diversity of class XI myosins in Arabidopsis thaliana. Plant Cell Physiol. 59:2268-2277.

  20. Ishii, M., Lupashin, V. V., and Nakano, A.(2018). Detailed analysis of the interaction of yeast COG complex. Cell Struct. Funct.43:119-127.

  21. Ito, E., Ebine, K., Choi, S.-W., Ichinose, S., Uemura, T.,Nakano, A., and Ueda, T. (2018). Integration of two RAB5 groups during endosomal transport in plants.eLife 7:e34064.

  22. Minamino, N., Kanazawa, T., Era, A., Ebine, K., Nakano, A., and Ueda, T. (2018) RAB GTPases in the basal land plant Marchantia polymorpha. Plant Cell Physiol. 59:845-856.

  23. Tanabashi, S., Shoda, K., Saito, C., Sakamoto, T., Kurata, T., Uemura, T., and Nakano, A. (2018) A missense mutation in the NSF gene causes abnormal Golgi morphology in Arabidopsis thaliana. Cell Struct. Funct. 43:41-51.

  24. Takemoto, K., Ebine, K., Askani, J. C., Goh, T., Schumacher, K.,Nakano, A., and Ueda, T. (2018) Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 115:E2457-E2466.

  25. Suda, Y., Tachikawa, H., Inoue, I., Kurita, T., Saito, C., Kurokawa, K., Nakano, A., and Irie, K. (2018) Activation of Rab GTPase Sec4 by its GEF Sec2 is required for prospore membrane formation during sporulation in yeast Saccharomyces cerevisiae. FEMS Yeast Res. 18:fox095.

  26. Sanchez-Rodriguez, C., Shi, Y., Kesten, C., Zhang, D., Sancho-Andrés, G., Ivakov, A., Lampugnani, E. R., Sklodowski, K., Fujimoto, M., Nakano, A., Bacic, A., Wallace, I. S., Ueda, T., van Damme, D., Zhou, Y., and Persson, S. (2018) The cellulose synthases are cargo of the TPLATE adaptor complex. Mol. Plant 11:346-349.

  27. Ito, Y., Uemura, T., and Nakano, A. (2018) Golgi Entry Core Compartment functions as the COPII-independent scaffold for ER-Golgi transport in plant cells.J. Cell Sci. 131:jcs203893.

  28. Yamagami, A., Saito, C., Sakuta, M., Shinozaki, M., Osada, H., Nakano, A., Asami, T., and Nakano, T. (2017) Brassinosteroids regulate vacuolar morphology in root meristem cells of Arabidopsisthaliana. Plant Signal. Behav. 13:e1417722.

  29. Ito, Y., Toyooka, K., Fujimoto, M., Ueda, T., Uemura, T., and Nakano, A. (2017) The trans-Golgi network and the Golgi stacks behave independently during regeneration after Brefeldin A treatment in tobacco BY-2 cells. Plant Cell Physiol. 58:811-821.

  30. Ishii, M., Suda, Y., Kurokawa, K., and Nakano, A.(2016) COPI is essential for Golgi cisternal maturation and dynamics. J. Cell Sci. 129:3251-3261.

  31. Kurokawa, K., Suda Y., and Nakano, A. (2016) Sar1 localizes at the rims of COPII-coated membranes in vivo. J. Cell Sci. 129:3231-3237.

  32. Kurokawa, K., Okamoto, M., and Nakano, A. (2014) Contact of cis-Golgi with ER exit sites executes cargo capture and delivery from the ER. Nat.Commun. 5:3653.

  33. Uemura, T., Suda, Y., Ueda, T., and Nakano, A. (2014) Dynamic behavior of the trans-Golgi network in root tissues of Arabidopsis revealed by super-resolution live imaging. Plant Cell Physiol.55:694-670.

  34. Suda, Y., Kurokawa, K., Hirata, R., and Nakano, A.< (2013) Rab GAP cascade regulates dynamics of Ypt6 during the Golgi maturation. Proc.Natl. Acad. Sci. U. S. A. 110:18976-18981.

  35. Ito, Y., Uemura, T., Shoda, K., Fujimoto, M., Ueda, T., Nakano, A. (2012) cis-Golgi proteins accumulate near the ER exit sites and act as the scaffold for Golgi regeneration after brefeldin A treatment in tobacco BY-2 cells. Mol. Biol. Cell 23:3203-3214.

  36. Okamoto, M., Kurokawa, K., Matsuura-Tokita, K., Saito, C., Hirata, R., and Nakano, A. (2012) High-curvature domains of the endoplasmic reticulum (ER) are important for the organization of ER exit sites in Saccharomyces cerevisiae.J. Cell Sci. 125:3412-3420.

  37. Uemura, T., Kim, H., Saito, C., Ebine, K., Ueda, T., Schulze-Lefert, P., and Nakano, A. (2012) Qa-SNAREs localized to the trans-Golgi network regulate multiple transport pathways and extracellular disease resistance in plants. Proc. Natl. Acad. Sci. U. S. A. 109:1784-1789.

Reviews

  1. Kurokawa, K. and Nakano, A. (2020). Live-cell imaging by super-resolution confocal live imaging microscopy (SCLIM): simultaneous three-color and four-dimensional live cell imaging with high space and time resolution. Bio-protocol 10:e3732.
  2. Nakano, A. and von Blume, J. (2019). Organelle zones. Mol. Biol. Cell 30:731.
  3. Kurokawa, K., and Nakano, A. (2019) The ER exit sites are specialized ER zones for the transport of cargo proteins from the ER to the Golgi apparatus. J Biochem. 165, 109–114.

  4. Suda, Y., Kurokawa, K., and Nakano, A.(2018) Regulation of ER-Golgi transport dynamics by GTPases in budding yeast. Frontiers Cell Dev. Biol. 5:122

  5. Robinson, D. G., Brandizzi, F., Hawes, C., and Nakano, A. (2015) Vesicles versus tubes: is ER-Golgi transport in plants fundamentally different from other eukaryotes? Plant Physiol. 168, 393-406

  6. Ito, Y., Uemura, T., and Nakano, A. (2014) Formation and maintenance of the plant Golgi apparatus. Intl. Rev. Cell Mol. Biol. 310, 221-287

  7. Kurokawa, K., Ishii, M., Suda, Y., Ichihara, A., and Nakano, A.(2013) Live cell visualization of Golgi membrane dynamics by super-resolution confocal live imaging microscopy. Methods Cell Biol. 118, 235-242

  8. Suda, Y. and Nakano, A. (2012) The yeast Golgi apparatus. Traffic 13, 505-510

  9. Nakano, A., and Luini, A. (2010) Passage through the Golgi. Curr. Opin. Cell Biol. 22, 471-478

  10. Glick, B. S., and Nakano, A. (2009) Membrane traffic within the Golgi apparatus. Annu. Rev. Cell Dev. Biol. 25:113-132