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Regulation of Cytosine Methylation and EpigeneticsF
Application of Zinc Finger Technology for DNA Modification
Covalent modification
of DNA, such as cytosine methylation, can induce heritable gene silencing. If
epigenetic modifications can be specifically targeted, new approaches to
transcriptional therapy should result. To address this challenge we sought to
design methyltransferases that would act only at a desired site by adapting the
sequence-enabled assembly strategy. We hypothesized that a functional and
site-specific enzyme could be self-assembled on a particular DNA sequence using
zinc finger proteins (ZFPs) appropriately fused to a recently described split
M.HhaI enzyme. If correctly designed, such a heterodimeric protein would be
active only at the site of assembly. To explore this hypothesis, each domain of
split M.HhaI (N- and C-terminal domains) was fused to previously designed
3-finger ZFPs, HS1 and HS2. Our split DNA methylase performed site-specific CpG
methylation in living cells without any background methylation when
appropriately assembled at the target site. This is the first successful
application of the sequence-enable enzyme reassembly approach in vivo.